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HampeTC
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I would second @CoolHandLuke ask the doctor to rescan even if you align it good enough it wont be as accurate as a proper arch scan. But if you really want to make the two scans into one unified mesh remember that the combine function in Meshmixer only "combines" the two meshes it does not stitch them together. For actually stitch them together into one mesh you will need to use the Boolian union feature, but its a bit more finicky then the combine feature. The way i would do it is cut away everything but the bridge on one scan and then try to boolian union that to the other scan and after that make the whole model water tight befor importing back into dental manager.