I recently did a full arch case for my trios doc 13 units he seated 10 of the 13, but the kicker is that the trios bite was off so I had to get a model printed from Argen then remount it with the blue muse he sent then rescan that printed model in and design the case, the issue was the 10 he seated were tight the other three margins were off. Not a bad success ratio but still no were near C&B ready material, great for model less single to two unit cases as a verification jig just to check contacts. Off a digital scan, once your die spacer setting are found your pretty much set on fit, just need to make sure your occ is clear and good and the printed model is used for contact verification only.
But not good for building units from scratch on. The model I get from Argen are pretty spot on and my units fit pretty good and my trios doc is happy with the results. I'd call the mfg and see about getting a tech out to help dial it in for you, you shouldn't be having issues like this.
Another way to test accuracy is have a Dr take a PVS impression as well as a digital design the unit see what the fit is. Hope you figure it out.